Parameter listSummary directory:The summary directory generated with “collect_MaChIAto_data.py”. Output prefix:The directory into which the output directory is saved. Name of extra data (optional):The name of the feature group that the next argume...
Output of MaChIAto Aligner
[Coming soon]
Usage of MaChIAto Aligner
Parameter listInput directory:The directory that MaChIAto Classifier generated. Output prefix:The directory into which the output directory is saved. Left extra sequence (optional):The outside sequence flanking 5’-homology arm of the donor. Right...
Output of MaChIAto Classifier
The classification result is visualized in the “MaChIAto_alignment_pie_chart.png”“MaChIAto_alignment_pie_chart.png” has the following labels: Unmodified: The unedited amplicon sequence Perfect Editing: The edited sequence that a user intended to ...
Usage of MaChIAto Classifier
Parameter list-m or –mode {str}: This parameter allows for the specification of the type of analysis: “CRISPResso” and “CRISPResso2” is allowed in the latest version -a or –amplicon_seq {str}: This parameter allows the user to enter the amplicon s...